Publications
Marie Curie International Outgoing Fellow
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection.
 
2015, Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, et al.
  1. Title 1
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A maturing understanding of the composition of the insect gene repertoire.
 
2015,  Waterhouse RM.
 
COIS review series on Insect Genomics
  1. Title 1
  2. Title 2
  3. Title 3
  4. Title 4
  5. Title 5
Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution.
 
2015, Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, et al.
  1. Title 1
  2. Title 2
  3. Title 3
Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.
 
2015, Anstead CA, Korhonen PK, Young ND, Hall RS, Jex AR, Murali SC, Hughes DST, Lee SF, Perry T, et al.
  1. Title 1
  2. Title 2
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
 
2015, Simão FA•, Waterhouse RM•, Ioannidis P, Kriventseva EV, Zdobnov EM.
  1. Title 1
  2. Title 2
  3. Title 3
Genomic signatures of evolutionary transitions from solitary to group living.
 
2015, Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, et al.
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A depauperate immune repertoire precedes evolution of sociality in bees.
 
2015, Barribeau SM, Sadd BM, du Plessis L, Brown MJF, Buechel SD, Cappelle K, Carolan JC, Christiaens O, Colgan TJ, et al.
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The genomes of two key bumblebee species with primitive eusocial organisation.
 
2015, Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJP, Hasselmann M, et al.
  1. Title 1
  2. Title 2
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  4. Title 4
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  6. Title 6
Long non-coding RNA discovery across the genus Anopheles reveals conserved secondary structures within and beyond the Gambiae complex.
 
2015, Jenkins AM, Waterhouse RM , Muskavitch MAT.
  1. lnRNAs1
  2. lnRNAs2
  3. lnRNAs3
  4. lnRNAs4
  5. lnRNAs5
  6. lnRNAs6
Evolution of sexual traits influencing vectorial capacity in anopheline mosquitoes.
 
2015, Mitchell SN, Kakani EG, South A, Howell PI, Waterhouse RM , Catteruccia F.
  1. mozsex1
  2. mozsex2
  3. mozsex3
  4. mozsex4
  5. mozsex5
A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.
 
2015, Zhao C, Escalante LN, Chen H, Benatti TR, Qu J, Chellapilla S, Waterhouse RM , Wheeler D, Andersson MN, et al.
  1. Mdest1
  2. Mdest2
  3. Mdest3
  4. Mdest4
Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.
 
2015, Neafsey DE•, Waterhouse RM•, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, et al.
  1. Ano16-1
  2. Ano16-2
  3. Ano16-3
  4. Ano16-4
  5. Ano16-5
  6. Ano16-6
  7. Ano16-7
  8. Ano16-8
  9. Ano16-9
  10. Ano16-10
  11. Ano16-11
  12. Ano16-12
  13. Ano16-13
  14. Ano16-14
  15. Ano16-15
  16. Ano16-16
  17. Ano16-17
  18. Ano16-18
  19. Ano16-19
  20. Ano16-20
  21. Ano16-21
  22. Ano16-22
  23. Ano16-23
  24. Ano16-24
  25. Ano16-25
  26. Ano16-26
  27. Ano16-27
  28. Ano16-28
  29. Ano16-29
  30. Ano16-30
  31. Ano16-31
Extensive introgression in a malaria vector species complex revealed by phylogenomics.
 
2015, Fontaine MC, Pease JB, Steele A, Waterhouse RM , Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, et al.
  1. gamintro1
  2. gamintro2
  3. gamintro3
  4. gamintro4
  5. gamintro5
  6. gamintro6
  7. gamintro7
  8. gamintro8
  9. gamintro9
  10. gamintro10
  11. gamintro11
  12. gamintro12
Scaffold assembly based on genome rearrangement analysis.
 
2015, Aganezov S, Sitdykova N, AGC Consortium, Alekseyev MA.
  1. assemb1
  2. assemb2
  3. assemb3
  4. assemb4
  5. assemb5
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.
 
2015, Kriventseva EV, Tegenfeldt F, Petty TJ, Waterhouse RM , Simão FA, Pozdnyakov IA, Ioannidis P, & Zdobnov EM.
  1. ODB-2015-1
  2. ODB-2015-2
  3. ODB-2015-3
  4. ODB-2015-4
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi.
 
2014, Jiang X, Peery A, Hall A, Sharma A, Chen XG, Waterhouse RM , Komissarov A, Riehl MM, Shouche Y, Sharakhova MV, et al.
  1. stephensi1
  2. stephensi2
  3. stephensi3
  4. stephensi4
  5. stephensi5
  6. stephensi6
  7. stephensi7
  8. stephensi8
  9. stephensi9
Phylogenetic analysis of the oriental-Palearctic-Afrotropical members of Anopheles (Culicidae: Diptera) based on nuclear rDNA and mitochondrial DNA characteristics.
2014, Karimian F, Oshaghi MA, Sedaghat MM, Waterhouse RM , Vatandoost H, Hanafi-Bojd AA, Ravasan NM, & Chavshin AR.
  1. iran1
  2. iran2
  3. iran3
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.
 
2014, Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, et al.
  1. mcinx1
  2. mcinx2
  3. mcinx3
  4. mcinx4
  5. mcinx5
  6. mcinx6
  7. mcinx7
  8. mcinx8
  9. mcinx9
Big data and other challenges in the quest for orthologs.
 
2014, Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C, & Quest for Orthologs consortium.
  1. QfO2
  2. QfO1
Finding the missing honey bee genes: lessons learned from a genome upgrade.
 
2014, Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, et al.
  1. HB-upgrade4
  2. HB-upgrade3
  3. HB-upgrade2
  4. HB-upgrade1
Antennal transcriptome profiles of anopheline mosquitoes reveal human host olfactory specialization in Anopheles gambiae.
 
2013, Rinker DC, Zhou X, Pitts RJ, AGC Consortium, Rokas A, & Zwiebel LJ.
  1. Antenna1
  2. Antenna2
  3. Antenna3
  4. Antenna4
  5. Antenna5
  6. Antenna6
  7. Antenna7
The Evolution of the Anopheles 16 Genomes Project.
 
2013, Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM , Williams LJ, & Besansky NJ.
  1. G3-16ano2
  2. G3-16ano1